vg::FragmentedHaplotypeVisit Struct Reference

Public Member Functions
	FragmentedHaplotypeVisit (HaplotypePartitioner::sequence_type sequence_visit, const HaplotypePartitioner &partitioner)
bool	same_chain (const FragmentedHaplotypeVisit &another) const
bool	operator< (const FragmentedHaplotypeVisit &another) const
HaplotypePartitioner::sequence_type	to_sequence () const

Public Attributes
gbwt::size_type	sequence_id
gbwt::size_type	gbwt_node_offset
gbwt::size_type	oriented_chain_id
gbwt::size_type	rank_in_chain
gbwt::size_type	rank_in_sequence

Constructor & Destructor Documentation

FragmentedHaplotypeVisit()

vg::FragmentedHaplotypeVisit::FragmentedHaplotypeVisit ( HaplotypePartitioner::sequence_type sequence_visit, const HaplotypePartitioner & partitioner )

inline

Member Function Documentation

operator<()

bool vg::FragmentedHaplotypeVisit::operator< ( const FragmentedHaplotypeVisit & another ) const

inline

same_chain()

bool vg::FragmentedHaplotypeVisit::same_chain ( const FragmentedHaplotypeVisit & another ) const

inline

to_sequence()

HaplotypePartitioner::sequence_type vg::FragmentedHaplotypeVisit::to_sequence ( ) const

inline

Member Data Documentation

gbwt_node_offset

gbwt::size_type vg::FragmentedHaplotypeVisit::gbwt_node_offset

oriented_chain_id

gbwt::size_type vg::FragmentedHaplotypeVisit::oriented_chain_id

rank_in_chain

gbwt::size_type vg::FragmentedHaplotypeVisit::rank_in_chain

rank_in_sequence

gbwt::size_type vg::FragmentedHaplotypeVisit::rank_in_sequence

sequence_id

gbwt::size_type vg::FragmentedHaplotypeVisit::sequence_id

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The documentation for this struct was generated from the following file:

• src/recombinator.cpp