banded_global_aligner.hpp File Reference

#include <stdio.h>
#include <ctype.h>
#include <iostream>
#include <vector>
#include <unordered_set>
#include <unordered_map>
#include <list>
#include <exception>
#include "handle.hpp"

Classes
class	vg::NoAlignmentInBandException
class	vg::BandMatricesTooBigException
class	vg::BandedGlobalAligner< IntType >
class	vg::BandedGlobalAligner< IntType >::BAMatrix
class	vg::BandedGlobalAligner< IntType >::AltTracebackStack
class	vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection
class	vg::BandedGlobalAligner< IntType >::BABuilder

Namespaces
namespace	vg