Bio::Emboss perl module version 5.0.0.1 ======================================= This module is an interface to the libraries of the EMBOSS package (European Molecular Biology Open Software Suite). With this module you can access EMBOSS databases and use EMBOSS functions to manipulate your data. You can write perl programs that look like any other EMBOSS program (command-line, web interface). INSTALLATION You must define EMB_ROOT -- EMBOSS installation path Probably also EMB_EXT_LIBS -- libraries used for building EMBOSS You can do this by modifying Makefile.PL or putting the proper values on the command-line together with Makefile.PL: perl Makefile.PL [EMB_ROOT=/some/path] [EMB_EXT_LIBS="-L/abc -lxyz"] make make test # optional perl t/seqret.pl -help # optional perl t/graphtest.pl # optional make epods # optional, # creates ajax documentation in # perl POD format # % perldoc Bio::Emboss::Ajax make install DEPENDENCIES This module requires an EMBOSS installation available for download at http://emboss.sourceforge.net/ The module was tested with EMBOSS (version 5.0.0). For EMBOSS-4.1.0 use Bio::Emboss-4.1.0 For EMBOSS-4.0.0 use Bio::Emboss-2.0.0 For EMBOSS-3.0.0 use Bio::Emboss-1.0.1 For older EMBOSS versions use Bio::Emboss-0.7. COPYRIGHT AND LICENCE Copyright (C) 2003-2007 Peter Ernst This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.